Articles

Interacting with BAM files

How to read single-end reads from a BAM file

How to read paired-end reads from a BAM file

How to read a BAM file in chunks

How to compute read coverage

Mass spectrometry

How to read mass spectrometry data

Tidy principles in Bioconductor

How to use tidy principles for RNA-seq data analysis

Accessing genomic annotation data

How to retrieve a gene model from AnnotationHub

How to load a gene model from a GFF or GTF file

How to get the exon and intron sequences of a given gene

How to read gene sets from GMT files

Working with biological sequences

How to compute sequence composition for genomic regions

How to extract promoter sequences