Articles

Interacting with BAM files

How to read single-end reads from a BAM file

How to read paired-end reads from a BAM file

How to read a BAM file in chunks

How to compute read coverage

Mass spectrometry

How to read mass spectrometry data

Tidy principles in Bioconductor

How to use tidy principles for genomic ranges manipulation

How to use tidy principles for RNA-seq data analysis

Accessing genomic annotation data

How to retrieve a gene model from AnnotationHub

How to load a gene model from a GFF or GTF file

How to get the exon and intron sequences of a given gene

How to read gene sets from GMT files

Working with biological sequences

How to compute sequence composition for genomic regions

How to extract promoter sequences