Package index

All functions

RaggedExperiment() seqinfo(<RaggedExperiment>) `seqinfo<-`(<RaggedExperiment>) rowRanges(<RaggedExperiment>) `rowRanges<-`(<RaggedExperiment>,<GRanges>) mcols(<RaggedExperiment>) `mcols<-`(<RaggedExperiment>) rowData(<RaggedExperiment>) `rowData<-`(<RaggedExperiment>) dim(<RaggedExperiment>) dimnames(<RaggedExperiment>) `dimnames<-`(<RaggedExperiment>,<list>) `dimnames<-`(<RaggedExperiment>,<ANY>) length(<RaggedExperiment>) colData(<RaggedExperiment>) `colData<-`(<RaggedExperiment>,<DataFrame>) assay(<RaggedExperiment>,<missing>) assay(<RaggedExperiment>,<ANY>) assays(<RaggedExperiment>) assayNames(<RaggedExperiment>) show(<RaggedExperiment>) as.list(<RaggedExperiment>) as.data.frame(<RaggedExperiment>) `$`(<RaggedExperiment>) `[`(<RaggedExperiment>,<ANY>,<ANY>,<ANY>) overlapsAny(<RaggedExperiment>,<Vector>) subsetByOverlaps(<RaggedExperiment>,<Vector>) subset(<RaggedExperiment>)

RaggedExperiment objects

RaggedExperiment-package

RaggedExperiment: Range-based data representation package

sparseAssay() compactAssay() disjoinAssay() qreduceAssay()

Create simplified representation of ragged assay data.

sparseSummarizedExperiment() compactSummarizedExperiment() disjoinSummarizedExperiment() qreduceSummarizedExperiment()

Create SummarizedExperiment representations by transforming ragged assays to rectangular form.