RaggedExperiment: Range-based data representation package

RaggedExperiment allows the user to represent, copy number, mutation, and other types of range-based data formats where optional information about samples can be provided. At the backbone of this package is the GRangesList class. The RaggedExperiment class uses this representation and presents the data in a couple of different ways:

• rowRanges

• colData

The rowRanges method will return the internal GRangesList representation of the dataset. A distinction between the SummarizedExperiment and the RaggedExperiment classes is that the RaggedExperiment class allows for ragged ranges, meaning that there may be a different number of ranges or rows per sample.

See also

Useful links:

• Report bugs at https://github.com/Bioconductor/RaggedExperiment/issues

Author

Maintainer: Marcel Ramos marcel.ramos@sph.cuny.edu (ORCID)

Authors:

• Martin Morgan martin.morgan@roswellpark.org

Other contributors:

• Lydia King L.King18@nuigalway.ie [contributor]