Chapter 6 Formal work flows: Human Cell Atlas ‘Optimus’ pipeline

Check out the BCC dockstore workshop for information on running workflows in Terra.

6.1 The HCA Optimus single cell analysis pipeline

A future iteration of this workshop will use Human Cell Atlas data to process BAM files to count matrices, and to explore the resulting data in R / Bioconductor

6.1.1 Running a work flow

6.1.2 Using data in R