S3 Generic to return all GDC fields
Usage
available_fields(x)
# S3 method for GDCQuery
available_fields(x)
# S3 method for character
available_fields(x)Arguments
- x
A character(1) string ('cases','files','projects', 'annotations') or an subclass of
GDCQuery.
Methods (by class)
available_fields(GDCQuery): GDCQuery methodavailable_fields(character): character method
Examples
available_fields('projects')
#> [1] "dbgap_accession_number"
#> [2] "disease_type"
#> [3] "intended_release_date"
#> [4] "name"
#> [5] "primary_site"
#> [6] "program.dbgap_accession_number"
#> [7] "program.name"
#> [8] "program.program_id"
#> [9] "project_autocomplete"
#> [10] "project_id"
#> [11] "releasable"
#> [12] "released"
#> [13] "state"
#> [14] "summary.case_count"
#> [15] "summary.data_categories.case_count"
#> [16] "summary.data_categories.data_category"
#> [17] "summary.data_categories.file_count"
#> [18] "summary.experimental_strategies.case_count"
#> [19] "summary.experimental_strategies.experimental_strategy"
#> [20] "summary.experimental_strategies.file_count"
#> [21] "summary.file_count"
#> [22] "summary.file_size"
projQuery = query('projects')
available_fields(projQuery)
#> [1] "dbgap_accession_number"
#> [2] "disease_type"
#> [3] "intended_release_date"
#> [4] "name"
#> [5] "primary_site"
#> [6] "program.dbgap_accession_number"
#> [7] "program.name"
#> [8] "program.program_id"
#> [9] "project_autocomplete"
#> [10] "project_id"
#> [11] "releasable"
#> [12] "released"
#> [13] "state"
#> [14] "summary.case_count"
#> [15] "summary.data_categories.case_count"
#> [16] "summary.data_categories.data_category"
#> [17] "summary.data_categories.file_count"
#> [18] "summary.experimental_strategies.case_count"
#> [19] "summary.experimental_strategies.experimental_strategy"
#> [20] "summary.experimental_strategies.file_count"
#> [21] "summary.file_count"
#> [22] "summary.file_size"