Examining biotools tagging of Bioconductor packages

Vincent J. Carey, stvjc at channing.harvard.edu

October 18, 2025

Introduction

Inspired by Herve Menager’s issue, I examined the ELIXIR Research Software Ecosystem source repo for metadata on biotools components. Information here was filtered using code in the inst/scrapes folder of the biocEDAM package. This information and the biotools_bioc data.frame in this package should be updated regularly.

A table with EDAM topics for the Bioconductor packages in biotools metadata

library(DT)
library(biocEDAM)
data(biotools_bioc)
datatable(biotools_bioc)