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Launching the New Bioconductor.org
Bioconductor
A look into the final updates, community-driven improvements, and what’s next for our website.
Feb 1, 2024
Maria Doyle
Journey of Growth: Our Internship experience with Bioconductor
open science
Bioconductor participated in the Outreachy Internship program for the December 2023 cohort. Our interns share their experience working on their various projects and Bioconductor in general.
Jan 31, 2024
Chioma Onyido, Afuape Esther, Peace Sandy
Bioconductor is leaving Twitter/X
Bioconductor
We’re transitioning away from Twitter/X in favor of platforms more aligned with our Code of Conduct.
Nov 17, 2023
Maria Doyle
We had a blast at BioC2023! Here’s what happened.
Bioconductor
events
BioC2023 kicked off at the Dana-Farber Cancer Institute in Boston, USA. It was opened by Vincent Carey, Professor of Medicine at Harvard and co-founder of the Bioconductor…
Aug 17, 2023
Anna Powell
Taking Bioconductor.org to the Next Level: Community, Collaboration and Progress
Bioconductor
Discover the recent advancements in the Bioconductor.org website redesign project, including the survey’s user insights, UX audit, collaborative workshops, UX testing, and the build phase, all leading to an exciting sneak peek at BioC2023.
Aug 1, 2023
Maria Doyle
Our Journey as Outreachy Interns with Bioconductor
open science
Bioconductor participated in the Outreachy Internship program for the May 2023 cohort. Join us as we share our enriching experience working on various projects at Bioconductor and delve into the world of open science.
Jul 14, 2023
Sonali Kumari, Daena Rys, Atrayee Samanta
Testing Packages on Linux ARM64 with GitHub Actions
tech-notes
GitHub Actions
ARM64
How to use GitHub Actions to systematically build and test a Bioconductor package on Linux ARM64 architecture.
Jul 14, 2023
Mike L. Smith
Reimagining Bioconductor.org: The Path to Our Website Redesign
Bioconductor
Discover the journey of Bioconductor’s website redesign project. Learn about the process, from initial planning to collaboration with NearForm as we shape the future of Bioconductor.org.
Jun 22, 2023
Maria Doyle
Bioconductor’s Participation in Galaxy Smorgasbord 2023: A Recap
events
education
Bioconductor made its first appearance at the Galaxy Smorgasbord this year. This post provides a summary of our successful participation.
Jun 16, 2023
Maria Doyle, Alex Mahmoud
ELIXIR All Hands Meeting 2023
Bioconductor
Bioconductor’s participation in ELIXIR All Hands Meeting in Dublin, Ireland, June 2023.
Jun 16, 2023
Anna Powell
Emulated build and test of Bioconductor packages for Linux ARM64
tech-notes
ARM64
Build and test for Linux ARM64 with Docker on x86_64 host
Jun 9, 2023
Martin Grigorov
Renaming the Default Branch to Devel
Bioconductor
During the 3.17 devel cycle, Bioconductor will rename the default branch devel.
Mar 1, 2023
J Wokaty
Bioconductor Carpentries instructors Year 1
education
An update on the Bioconductor Carpentries global training program - applicants selected for Year 1
Feb 24, 2023
Maria Doyle
Introducing CuratedAtlasQueryR package
Package
CuratedAtlasQueryR is a new package that enables easy programmatic exploration of CELLxGENE single-cell human cell atlas data.
Feb 23, 2023
Maria Doyle, Stefano Mangiola
Our experience as Outreachy interns with Bioconductor
open science
Bioconductor participated in the Outreachy Internship program for the December 2022 cohort. Our interns share their experience working on their various projects and bioconductor in general.
Jan 22, 2023
Beryl Kanali, Atuhurira Kirabo
Bioconductor Hacktoberfest 2022 review and looking ahead to 2023
events
Last October, Bioconductor joined Hacktoberfest and got great community contributions there. Here, we describe its success and notify the community we plan to participate in 2023.
Jan 20, 2023
Maria Doyle, Kozo Nishida, Kevin Rue-Albrecht
Recommended Awesome Lists for Bioconductor Community: Oct 2022 Edition
education
This blog post consolidates web links to different Awesome Lists that may be useful to those just starting up in bioinformatics and those experienced in the field.
Oct 22, 2022
Jeremy Selva
Bioconductor becomes a Carpentries member organization
education
Starting from August 1, 2022, Bioconductor will be a member of The Carpentries. Among other things, the membership enables us to allow 15 individuals to follow the Carpentries’ Instructor Training program and become certified Carpentries Instructors.
Jul 12, 2022
Charlotte Soneson, Laurent Gatto, Toby Hodges, Jenny Drnevich, Robert Castelo, Susan Holmes
Join the Bioconductor Community Advisory Board
BioC
CAB
Each year the Bioconductor Community Advisory Board (CAB) puts out a public call for new board members. This post tells you more about what the CAB does and how you can apply to become a member.
Feb 1, 2022
Kozo Nishida, Matt Ritchie
metaRbolomics hackathon to improve interoperability of metabolomics-related R packages
Metabolomics
Mass Spectrometry
Hackathon
Open Science
The 3rd metaRbolomics hackathon took place as a in-person workshop in Wittenberg (Germany) in November 2021. The aim was to improve interoperability of metabolomics/mass spectrometry-related R packages, combine development efforts and identify gaps and needs in current available functionality. It was a fun event with a lot of discussions and coding as well as socializing and networking.
Jan 18, 2022
Johannes Rainer
Celebrating 20 years of Bioconductor
events
The Bioconductor project started in 2001 and, during the Bioconductor conference 2021, celebrated 20 years of collaborative work for the development of open source and open development software.”.
Jan 14, 2022
Kevin Rue-Albrecht
BioC Asia 2021 は言語障壁の緩和に挑戦し、多様性を実現した
Japanese
BioC
Diversity
BioC Asia 2021 の運営委員会は Zoom や YouTube を用いて「英語のリアルタイムキャプションの追加」 「英語キーノートスピーチの日本語翻訳キャプションの追加」「英語、日本語、中国語の3カ国語での並行ワークショップ」を行い、 カンファレンスの多言語対応を実現しました。
Jan 12, 2022
西田 孝三
BioC Asia 2021 challenged to overcoming language barriers and respected diversity
BioC
Diversity
BioC Asia 2021 organizing committee used Zoom and YouTube to “add real-time English captions”, “add Japanese translation captions for English keynote”, and “run 3 parallel workshops: English, Japanese, and Mandarin”.
Dec 9, 2021
Kozo Nishida
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